From 8fb3216a83a91642d49f662299eee258993d23f0 Mon Sep 17 00:00:00 2001 From: mehdijoodaki Date: Mon, 27 Apr 2026 17:01:24 +0200 Subject: [PATCH 1/4] fix pilot version --- .github/workflows/python-package.yml | 6 +++--- test/import_test.py | 3 ++- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index dba78ac..5af965e 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -16,7 +16,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.11.5", "3.12"] + python-version: ["3.9", "3.10","3.11","3.12"] steps: - uses: actions/checkout@v4 @@ -29,10 +29,10 @@ jobs: run: | python -m pip install --upgrade pip python -m pip install flake8 pytest + python -m pip install git+https://github.com/Costalab/PILOT python -m pip install git+https://github.com/jsnagai/Nichesphere/ python -m pip install pycrosstalker - python -m pip install git+https://github.com/Costalab/PILOT@v2.0.4 - + if [ -f requirements.txt ]; then pip install -r requirements.txt; fi - name: Lint with flake8 run: | diff --git a/test/import_test.py b/test/import_test.py index d496088..53fa64c 100644 --- a/test/import_test.py +++ b/test/import_test.py @@ -3,4 +3,5 @@ def test_import_package(): importlib.import_module("nichesphere") importlib.import_module("pycrosstalker") - + importlib.import_module("pilotpy") + From 1df1f3ca93b21f2a6932c47546184d6210caf0a6 Mon Sep 17 00:00:00 2001 From: mehdijoodaki Date: Mon, 27 Apr 2026 17:09:09 +0200 Subject: [PATCH 2/4] python vesrion limited nichphere --- .github/workflows/python-package.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 5af965e..0b9d821 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -16,7 +16,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.9", "3.10","3.11","3.12"] + python-version: ["3.11","3.12","3.13","3.14"] steps: - uses: actions/checkout@v4 From 8164c35855629933b4cbc6cc2bdec8f471857c16 Mon Sep 17 00:00:00 2001 From: mehdijoodaki Date: Mon, 27 Apr 2026 17:11:54 +0200 Subject: [PATCH 3/4] test python version --- .github/workflows/python-package.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 0b9d821..931e094 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -16,7 +16,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.11","3.12","3.13","3.14"] + python-version: ["3.9","3.10","3.11","3.12","3.13","3.14"] steps: - uses: actions/checkout@v4 From 196c513ba475c66395f9f7836a257155db85f1e4 Mon Sep 17 00:00:00 2001 From: mehdijoodaki Date: Mon, 27 Apr 2026 17:14:21 +0200 Subject: [PATCH 4/4] fix python version --- .github/workflows/python-package.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 931e094..0b9d821 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -16,7 +16,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.9","3.10","3.11","3.12","3.13","3.14"] + python-version: ["3.11","3.12","3.13","3.14"] steps: - uses: actions/checkout@v4