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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(annotate_with_biomart)
export(calculate_fisher)
export(check_fast5_filetype)
export(check_output_directory)
export(check_polya_length_filetype)
export(check_tails_dorado_DRS)
export(check_tails_dorado_cDNA)
export(check_tails_guppy)
export(combine_gafs)
export(convert_tailfindr_output)
export(correct_class_data)
export(correct_labels)
export(correct_residue_data)
export(count_class)
export(count_nonA_abundance)
export(count_residues)
export(count_trailing_chars)
export(create_gaf)
export(create_gaf_list)
export(create_gaf_list_A)
export(create_outputs)
export(create_outputs_dorado)
export(create_outputs_dorado_cdna)
export(create_tail_chunk_list)
export(create_tail_chunk_list_A)
export(create_tail_chunk_list_dorado)
export(create_tail_chunk_list_trainingset)
export(create_tail_feature_list)
export(create_tail_feature_list_A)
export(create_tail_feature_list_trainingset)
export(create_tail_features_list_dorado)
export(detect_orientation_multiple)
export(detect_orientation_single)
export(edit_distance_hw)
export(extract_data_from_bam)
export(extract_polya_data)
export(extract_tail_data)
export(extract_tail_data_trainingset)
export(extract_tails_from_pod5)
export(filter_dorado_summary)
export(filter_nonA_chunks_trainingset)
export(filter_signal_by_threshold)
export(filter_signal_by_threshold_trainingset)
export(get_mode)
export(launch_signal_browser)
export(load_keras_model)
export(merge_cdna_results)
export(merge_nonA_tables)
export(nanopolish_qc)
export(nonA_fisher)
export(plot_class_counts)
export(plot_gaf)
export(plot_multiple_gaf)
export(plot_nanopolish_qc)
export(plot_nonA_abundance)
export(plot_panel_characteristics)
export(plot_residue_counts)
export(plot_rug_density)
export(plot_squiggle_fast5)
export(plot_squiggle_pod5)
export(plot_tail_chunk)
export(plot_tail_distribution)
export(plot_tail_range_fast5)
export(plot_tail_range_pod5)
export(predict_gaf_classes)
export(prepare_trainingset)
export(preprocess_inputs)
export(preprocess_inputs_cdna)
export(process_dorado_signal_files)
export(process_dorado_summary)
export(process_polya_complete)
export(process_polya_parts)
export(process_polya_reads_cdna)
export(process_polyt_reads_cdna)
export(read_class_multiple)
export(read_class_single)
export(read_residue_multiple)
export(read_residue_single)
export(reclassify_ninetails_data)
export(reverse_complement)
export(save_cdna_outputs)
export(save_outputs)
export(split_bam_file_cdna)
export(split_polya_data)
export(split_tail_centered)
export(split_tail_centered_dorado)
export(split_tail_centered_trainingset)
export(split_with_overlaps)
export(spread_nonA_residues)
export(substitute_gaps)
export(summarize_nonA)
export(winsorize_signal)
importFrom(foreach,"%dopar%")
importFrom(magrittr,"%>%")
importFrom(parallel,detectCores)
importFrom(reticulate,import)
importFrom(reticulate,import_builtins)
importFrom(reticulate,py_config)
importFrom(reticulate,py_to_r)
importFrom(rlang,":=")
importFrom(utils,adist)
importFrom(utils,head)
importFrom(utils,write.csv)