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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 380 166

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 26 15

Repositories

Showing 10 of 474 repositories
  • mtrain_regimens Public

    Repository to track training stages and regimens for visual behavior

    AllenInstitute/mtrain_regimens’s past year of commit activity
    Python 3 4 14 0 Updated Apr 19, 2026
  • deep_ccf_registration Public

    Tissue slice registration to the CCF using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 18, 2026
  • SPOCTT Public

    Tools, tutorials, and resources associated with the SPOCTT initiative (Scientific and Public Outreach of Cell Type Taxonomies)

    AllenInstitute/SPOCTT’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 3 0 0 Updated Apr 18, 2026
  • CHARGE_taxonomy Public

    GitHub repo for the script used to generate CHARGE Rmd files starting from AIT files. This needs to be separated from the CHARGE app repo to avoid requiring a bunch off unnecessary dependencies.

    AllenInstitute/CHARGE_taxonomy’s past year of commit activity
    R 0 0 0 0 Updated Apr 18, 2026
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 5 4 0 0 Updated Apr 17, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 8 MIT 0 0 0 Updated Apr 17, 2026
  • biorealistic-v1-model Public
    AllenInstitute/biorealistic-v1-model’s past year of commit activity
    Python 9 BSD-3-Clause 1 4 0 Updated Apr 17, 2026
  • aibs-informatics-core Public

    Core library to be used as foundation across multiple projects

    AllenInstitute/aibs-informatics-core’s past year of commit activity
    Python 2 0 0 0 Updated Apr 17, 2026
  • MultiTaskMPN Public
    AllenInstitute/MultiTaskMPN’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Apr 17, 2026
  • ACE Public

    R Shiny app for comparison of annotations (e.g., cell type assignments)

    AllenInstitute/ACE’s past year of commit activity
    R 4 1 8 (1 issue needs help) 0 Updated Apr 17, 2026
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