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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please fill out an issue on https://github.com/cdcgov/template logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 24 34

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    41 48

Repositories

Showing 10 of 543 repositories
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 103 Apache-2.0 36 11 0 Updated May 8, 2026
  • CDCgov/NEDSS-Modernization’s past year of commit activity
    Java 26 7 0 8 Updated May 8, 2026
  • cfa-dagster Public
    CDCgov/cfa-dagster’s past year of commit activity
    Python 8 Apache-2.0 0 10 1 Updated May 8, 2026
  • CDCgov/dibbs-ecr-diff’s past year of commit activity
    Dockerfile 1 Apache-2.0 0 14 3 Updated May 8, 2026
  • MicrobeTrace Public Forked from AABoyles/MicrobeTrace

    The Visualization Multitool for Molecular Epidemiology and Bioinformatics

    CDCgov/MicrobeTrace’s past year of commit activity
    TypeScript 99 46 169 16 Updated May 8, 2026
  • prime-fhir-converter Public

    The CDC’s Pandemic-Ready Interoperability Modernization Effort (PRIME) Java based FHIR conversion library

    CDCgov/prime-fhir-converter’s past year of commit activity
    Kotlin 14 Apache-2.0 5 2 0 Updated May 8, 2026
  • ocio-wsl Public

    This repository build images for Windows Subsystem Linux (WSL2) for CDC developers.

    CDCgov/ocio-wsl’s past year of commit activity
    Shell 4 MIT 0 2 0 Updated May 8, 2026
  • CDCgov/stimulant_opioid_algorithm_medical_codes_R’s past year of commit activity
    HTML 4 Apache-2.0 3 0 0 Updated May 7, 2026
  • prime-simplereport Public

    SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

    CDCgov/prime-simplereport’s past year of commit activity
    Java 62 CC0-1.0 63 188 45 Updated May 7, 2026
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 7 8 0 0 Updated May 7, 2026

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