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Cloufield/README.md

Hello! I am He Yunye, an Assistant Professor in the Laboratory of Complex Trait Genomics at The University of Tokyo.

Python packages

  • gwaslab: A Python package for quality control, standardization, harmonization, and visualization of GWAS summary statistics, including Manhattan and Q–Q plots.
  • gwaspeek: An interactive terminal viewer for GWAS summary statistics that lets you pan, zoom, and inspect Manhattan plots
  • sumstats-liftover: A fast and lightweight Python package for lifting over GWAS summary statistics between genome builds (for example, GRCh37 and GRCh38), designed for scalable coordinate conversion workflows.
  • formatbook: A companion repository for gwaslab that collects commonly used GWAS summary statistics formats for header conversion and format standardization.

GitHub Pages

  • CTGCatalog: A curated collection of commonly used resources in complex trait genetics.
  • GWASTutorial: A beginner-friendly tutorial covering the fundamentals and practice of GWAS.

Pinned Loading

  1. gwaslab gwaslab Public

    A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

    Python 291 41

  2. GWASTutorial GWASTutorial Public

    GWAS Tutorial for Beginners

    Jupyter Notebook 406 97

  3. CTGCatalog CTGCatalog Public

    A collection of commonly used resources for complex trait genetics.

    Python 38 7

  4. sumstats-liftover sumstats-liftover Public

    Fast chain-based liftover for pandas DataFrames

    Python 2

  5. formatbook formatbook Public

    A collection of commonly used formats for quick lookup.

    Jupyter Notebook 13 1

  6. gwaspeek gwaspeek Public

    An interactive terminal viewer for GWAS summary statistics that lets you pan, zoom, and inspect Manhattan plots

    Python 2